Variant report

Variant	rs11925276
Chromosome Location	chr3:156480912-156480913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156478908..156481855-chr3:156482060..156485286,3	MCF-7	breast:
2	chr3:156479506..156481300-chr3:156485653..156488163,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11918032	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918873	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921057	1.00[EUR][1000 genomes]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107929	1.00[AMR][1000 genomes]
rs12107942	1.00[AMR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs16826541	1.00[AMR][1000 genomes]
rs16826543	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs56772168	1.00[EUR][1000 genomes]
rs57676345	1.00[EUR][1000 genomes]
rs6763863	1.00[AMR][1000 genomes]
rs6768485	1.00[AMR][1000 genomes]
rs6774975	1.00[EUR][1000 genomes]
rs6788106	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789293	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73015891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019709	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73019733	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73021795	1.00[EUR][1000 genomes]
rs73021801	1.00[EUR][1000 genomes]
rs73025844	1.00[EUR][1000 genomes]
rs73025863	1.00[EUR][1000 genomes]
rs73025882	1.00[EUR][1000 genomes]
rs73025895	1.00[EUR][1000 genomes]
rs73025901	1.00[EUR][1000 genomes]
rs73027741	1.00[EUR][1000 genomes]
rs73027753	1.00[EUR][1000 genomes]
rs73029518	1.00[EUR][1000 genomes]
rs7612186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623810	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631744	1.00[AMR][1000 genomes]
rs7645166	1.00[EUR][1000 genomes]
rs7652081	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156477800-156481000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:156477800-156481200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:156477800-156481200	Enhancers	NHEK	skin
4	chr3:156478000-156481000	Enhancers	HMEC	breast
5	chr3:156478000-156482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156478000-156483400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156478000-156483800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:156478200-156481000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156478200-156481000	Enhancers	HSMM	muscle
10	chr3:156478200-156481200	Enhancers	Osteobl	bone
11	chr3:156478200-156483600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:156478400-156481000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:156478400-156481000	Enhancers	HSMMtube	muscle
14	chr3:156478800-156481000	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:156478800-156481200	Enhancers	Fetal Stomach	stomach
16	chr3:156479200-156481600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:156479400-156481800	Weak transcription	GM12878-XiMat	blood
18	chr3:156479400-156483200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:156479800-156481000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:156480000-156481000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:156480000-156481000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:156480000-156481000	Enhancers	Fetal Lung	lung
23	chr3:156480000-156481000	Enhancers	NH-A	brain
24	chr3:156480200-156481000	Enhancers	Right Atrium	heart
25	chr3:156480200-156481400	Weak transcription	K562	blood
26	chr3:156480400-156481600	Enhancers	NHDF-Ad	bronchial
27	chr3:156480400-156482000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:156480600-156481000	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr3:156480800-156481200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:156480800-156481800	Weak transcription	NHLF	lung
31	chr3:156480800-156482600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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