Variant report

Variant	rs16826244
Chromosome Location	chr3:156179555-156179556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156177261..156180742-chr3:156201480..156205067,4	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826264	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826295	1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	1.00[EUR][1000 genomes]
rs73017905	1.00[EUR][1000 genomes]
rs73017919	1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	1.00[EUR][1000 genomes]
rs7635610	1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9828203	1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[EUR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9873235	1.00[EUR][1000 genomes]
rs9874012	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156173000-156180400	Enhancers	K562	blood
2	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156175400-156180200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:156175600-156180400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:156175600-156180600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:156175800-156180600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:156176200-156180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:156176400-156180000	Enhancers	Colon Smooth Muscle	Colon
9	chr3:156177000-156180000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:156177000-156180000	Enhancers	Fetal Heart	heart
11	chr3:156177000-156180600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
13	chr3:156177200-156180400	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:156177400-156180200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:156177600-156182800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:156178400-156180800	Weak transcription	Aorta	Aorta
18	chr3:156178800-156179600	Enhancers	Fetal Stomach	stomach
19	chr3:156179000-156180400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:156179200-156180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:156179200-156183000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:156179400-156181000	Weak transcription	Left Ventricle	heart

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