Variant report

Variant	rs16826264
Chromosome Location	chr3:156181878-156181879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156180313..156182114-chr3:156187638..156189146,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12106760	1.00[EUR][1000 genomes]
rs12106846	1.00[EUR][1000 genomes]
rs12107991	1.00[EUR][1000 genomes]
rs12107994	1.00[EUR][1000 genomes]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs16826126	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16826244	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826295	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs16826610	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441070	1.00[MEX][hapmap]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	1.00[EUR][1000 genomes]
rs73012043	1.00[EUR][1000 genomes]
rs73013921	1.00[EUR][1000 genomes]
rs73013929	1.00[EUR][1000 genomes]
rs73013931	1.00[EUR][1000 genomes]
rs73013985	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	1.00[EUR][1000 genomes]
rs73017905	1.00[EUR][1000 genomes]
rs73017919	1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	1.00[EUR][1000 genomes]
rs7635610	1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9828203	1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[EUR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9873235	1.00[EUR][1000 genomes]
rs9874012	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16826264	THNSL2	trans	lymphoblastoid	seeQTL
rs16826264	PRKCZ	trans	lymphoblastoid	seeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
3	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156177600-156182800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156179200-156183000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:156180000-156183000	Weak transcription	Fetal Heart	heart
7	chr3:156180000-156183800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:156180000-156186000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:156180200-156182000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:156180200-156182200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:156180400-156182200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr3:156180600-156182000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:156180600-156182200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:156180600-156182200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:156181200-156182000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:156181200-156182000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr3:156181200-156182200	Enhancers	Aorta	Aorta
18	chr3:156181400-156182200	Enhancers	Stomach Smooth Muscle	stomach
19	chr3:156181400-156183000	Enhancers	K562	blood
20	chr3:156181800-156182000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:156181800-156182200	Enhancers	HSMMtube	muscle
22	chr3:156181800-156182400	Enhancers	HSMM	muscle
23	chr3:156181800-156182800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:156181800-156183200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:156181800-156183600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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