Variant report

Variant	rs16826295
Chromosome Location	chr3:156195178-156195179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156194846..156197692-chr3:156202889..156204599,2	MCF-7	breast:
2	chr3:156193314..156196115-chr3:156198212..156200726,2	K562	blood:
3	chr3:156194025..156195938-chr3:156197572..156200037,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16826126	1.00[MEX][hapmap]
rs16826244	1.00[AMR][1000 genomes]
rs16826248	1.00[AMR][1000 genomes]
rs16826250	1.00[AMR][1000 genomes]
rs16826264	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6441070	1.00[MEX][hapmap]
rs6441073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156183400-156200400	Weak transcription	HSMM	muscle
2	chr3:156187800-156200800	Weak transcription	HSMMtube	muscle
3	chr3:156190000-156195200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156190000-156202400	Weak transcription	Aorta	Aorta
5	chr3:156190800-156196800	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:156191400-156195400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:156191400-156196800	Weak transcription	Fetal Stomach	stomach
8	chr3:156192400-156198800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:156193000-156198600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:156193200-156195400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:156193200-156199400	Weak transcription	K562	blood
12	chr3:156193200-156200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:156194400-156195800	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:156194600-156195400	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:156194600-156197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:156194800-156195800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:156194800-156195800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:156195000-156195400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:156195000-156195400	Enhancers	Fetal Lung	lung
20	chr3:156195000-156195800	Enhancers	NHDF-Ad	bronchial
21	chr3:156195000-156195800	Enhancers	Osteobl	bone
22	chr3:156195000-156196400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156195000-156196400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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