Variant report

Variant	rs55973260
Chromosome Location	chr3:156074322-156074323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs12163648	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs28368547	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59046488	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6441062	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6764802	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775545	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73873328	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73873329	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648151	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9823622	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9828203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833026	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844410	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9855009	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9867561	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9872444	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9873235	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9877749	1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156069800-156076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:156070800-156074600	Weak transcription	Right Atrium	heart
3	chr3:156071400-156074400	Weak transcription	Fetal Heart	heart
4	chr3:156071600-156076000	Weak transcription	Hela-S3	cervix
5	chr3:156073200-156074400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:156073200-156076000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:156073400-156076000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:156073600-156075000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:156074000-156075000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156074200-156074400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:156074200-156075000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:156074200-156075000	Enhancers	Primary hematopoietic stem cells	blood

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