Variant report

Variant	rs59046488
Chromosome Location	chr3:155928699-155928700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12163648	1.00[EUR][1000 genomes]
rs12330910	1.00[EUR][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13323310	1.00[EUR][1000 genomes]
rs13325529	1.00[EUR][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[EUR][1000 genomes]
rs16826014	1.00[EUR][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs28368547	1.00[EUR][1000 genomes]
rs28555456	1.00[EUR][1000 genomes]
rs4630897	1.00[EUR][1000 genomes]
rs55973260	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	1.00[EUR][1000 genomes]
rs6441060	1.00[EUR][1000 genomes]
rs6762484	1.00[EUR][1000 genomes]
rs6764802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6771705	1.00[EUR][1000 genomes]
rs6773597	1.00[EUR][1000 genomes]
rs6775388	1.00[EUR][1000 genomes]
rs6775545	1.00[EUR][1000 genomes]
rs6786904	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	1.00[EUR][1000 genomes]
rs6809595	1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	1.00[EUR][1000 genomes]
rs73017905	1.00[EUR][1000 genomes]
rs73017919	1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs7625905	1.00[EUR][1000 genomes]
rs7626513	1.00[EUR][1000 genomes]
rs7634841	1.00[EUR][1000 genomes]
rs7635610	1.00[EUR][1000 genomes]
rs7639374	1.00[EUR][1000 genomes]
rs7641812	1.00[EUR][1000 genomes]
rs7648151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[EUR][1000 genomes]
rs9289963	1.00[EUR][1000 genomes]
rs9289964	1.00[EUR][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[EUR][1000 genomes]
rs9828203	1.00[EUR][1000 genomes]
rs9829670	1.00[EUR][1000 genomes]
rs9830004	1.00[EUR][1000 genomes]
rs9833026	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9839152	1.00[EUR][1000 genomes]
rs9844565	1.00[EUR][1000 genomes]
rs9858999	1.00[EUR][1000 genomes]
rs9866817	1.00[EUR][1000 genomes]
rs9873235	1.00[EUR][1000 genomes]
rs9874012	1.00[EUR][1000 genomes]
rs9877749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880939	1.00[EUR][1000 genomes]
rs9882449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155922600-155929800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:155925200-155929000	Weak transcription	HMEC	breast
3	chr3:155925600-155929800	Enhancers	Fetal Heart	heart
4	chr3:155926400-155928800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:155926600-155929400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:155926600-155933400	Weak transcription	HSMMtube	muscle
7	chr3:155926800-155935600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:155927000-155935400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:155927200-155929200	Weak transcription	Osteobl	bone
10	chr3:155927200-155930400	Weak transcription	Aorta	Aorta
11	chr3:155927800-155930600	Enhancers	HUVEC	blood vessel
12	chr3:155928000-155934400	Weak transcription	Pancreas	Pancrea
13	chr3:155928400-155930200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:155928400-155930800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:155928600-155929000	Weak transcription	NH-A	brain
16	chr3:155928600-155929600	Weak transcription	Gastric	stomach

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