Variant report
| Variant | rs6775388 |
|---|---|
| Chromosome Location | chr3:155836353-155836354 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs11915601 | 1.00[EUR][1000 genomes] |
| rs11927594 | 1.00[EUR][1000 genomes] |
| rs12163648 | 1.00[EUR][1000 genomes] |
| rs12330910 | 1.00[EUR][1000 genomes] |
| rs13325529 | 1.00[EUR][1000 genomes] |
| rs13327461 | 1.00[EUR][1000 genomes] |
| rs16825997 | 1.00[EUR][1000 genomes] |
| rs28368547 | 1.00[EUR][1000 genomes] |
| rs28555456 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4621291 | 1.00[EUR][1000 genomes] |
| rs59046488 | 1.00[EUR][1000 genomes] |
| rs6762067 | 1.00[EUR][1000 genomes] |
| rs6764802 | 1.00[EUR][1000 genomes] |
| rs6773597 | 1.00[EUR][1000 genomes] |
| rs6786904 | 0.82[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6809595 | 1.00[EUR][1000 genomes] |
| rs73014109 | 1.00[EUR][1000 genomes] |
| rs73014142 | 1.00[EUR][1000 genomes] |
| rs73014146 | 1.00[EUR][1000 genomes] |
| rs73014153 | 1.00[EUR][1000 genomes] |
| rs73014154 | 1.00[EUR][1000 genomes] |
| rs7625905 | 1.00[EUR][1000 genomes] |
| rs7626513 | 1.00[EUR][1000 genomes] |
| rs7637292 | 1.00[EUR][1000 genomes] |
| rs7639374 | 1.00[EUR][1000 genomes] |
| rs7641812 | 1.00[EUR][1000 genomes] |
| rs7648151 | 1.00[EUR][1000 genomes] |
| rs924352 | 1.00[EUR][1000 genomes] |
| rs9289963 | 1.00[EUR][1000 genomes] |
| rs9289964 | 1.00[EUR][1000 genomes] |
| rs9810962 | 1.00[EUR][1000 genomes] |
| rs9812993 | 1.00[EUR][1000 genomes] |
| rs9833026 | 1.00[EUR][1000 genomes] |
| rs9844565 | 0.83[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9858999 | 1.00[EUR][1000 genomes] |
| rs9866817 | 1.00[EUR][1000 genomes] |
| rs9877749 | 1.00[EUR][1000 genomes] |
| rs9882449 | 0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv592085 | chr3:155827634-156012679 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:155835200-155836600 | Weak transcription | Pancreas | Pancrea |
