Variant report

Variant	rs6441060
Chromosome Location	chr3:156059827-156059828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs12053873	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12163648	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13315734	1.00[EUR][1000 genomes]
rs13320345	1.00[CHB][hapmap]
rs13323310	1.00[CHB][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13327461	1.00[EUR][1000 genomes]
rs1375929	1.00[EUR][1000 genomes]
rs16825997	1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16826014	1.00[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826015	1.00[EUR][1000 genomes]
rs16826037	1.00[EUR][1000 genomes]
rs16826126	1.00[EUR][1000 genomes]
rs16826244	1.00[EUR][1000 genomes]
rs16826248	1.00[EUR][1000 genomes]
rs16826250	1.00[EUR][1000 genomes]
rs16826264	1.00[EUR][1000 genomes]
rs2167145	1.00[CHB][hapmap]
rs28368547	1.00[EUR][1000 genomes]
rs4630897	1.00[CHB][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55818638	1.00[ASN][1000 genomes]
rs55973260	1.00[EUR][1000 genomes]
rs57058377	1.00[EUR][1000 genomes]
rs58463289	1.00[EUR][1000 genomes]
rs59046488	1.00[EUR][1000 genomes]
rs59223796	1.00[EUR][1000 genomes]
rs60249133	1.00[EUR][1000 genomes]
rs61458860	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441055	0.84[ASN][1000 genomes]
rs6441056	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441057	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441058	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441071	1.00[EUR][1000 genomes]
rs6441073	1.00[EUR][1000 genomes]
rs6762484	1.00[CHB][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764802	1.00[EUR][1000 genomes]
rs6765899	1.00[EUR][1000 genomes]
rs6766110	1.00[CHB][hapmap]
rs6766215	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs6771705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6773597	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6775545	1.00[EUR][1000 genomes]
rs6794030	1.00[EUR][1000 genomes]
rs6806552	1.00[EUR][1000 genomes]
rs6809595	1.00[EUR][1000 genomes]
rs73014109	1.00[EUR][1000 genomes]
rs73014142	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73014146	1.00[EUR][1000 genomes]
rs73014153	1.00[EUR][1000 genomes]
rs73014154	1.00[EUR][1000 genomes]
rs73014161	1.00[EUR][1000 genomes]
rs73016002	1.00[EUR][1000 genomes]
rs73017905	1.00[EUR][1000 genomes]
rs73017919	1.00[EUR][1000 genomes]
rs73017930	1.00[EUR][1000 genomes]
rs73017998	1.00[EUR][1000 genomes]
rs73019918	1.00[EUR][1000 genomes]
rs73019921	1.00[EUR][1000 genomes]
rs73019934	1.00[EUR][1000 genomes]
rs73019935	1.00[EUR][1000 genomes]
rs73019940	1.00[EUR][1000 genomes]
rs73876148	0.84[ASN][1000 genomes]
rs7613022	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7616667	0.84[ASN][1000 genomes]
rs7621244	1.00[EUR][1000 genomes]
rs7623380	1.00[ASN][1000 genomes]
rs7625905	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7626513	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7634841	1.00[EUR][1000 genomes]
rs7635610	1.00[EUR][1000 genomes]
rs7639374	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7641812	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7648151	1.00[EUR][1000 genomes]
rs7648434	1.00[EUR][1000 genomes]
rs924352	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289963	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9289964	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9810962	1.00[EUR][1000 genomes]
rs9812993	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9823449	1.00[CHB][hapmap];0.89[YRI][hapmap]
rs9828203	1.00[EUR][1000 genomes]
rs9829670	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830004	1.00[EUR][1000 genomes]
rs9833026	1.00[EUR][1000 genomes]
rs9833563	1.00[EUR][1000 genomes]
rs9839152	1.00[EUR][1000 genomes]
rs9843163	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9844584	1.00[CHB][hapmap]
rs9848813	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9858999	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9866817	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9873235	1.00[EUR][1000 genomes]
rs9874012	1.00[EUR][1000 genomes]
rs9877749	1.00[EUR][1000 genomes]
rs9880939	1.00[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156053000-156064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156053200-156061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:156058400-156060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:156058400-156060000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:156058600-156071600	Weak transcription	Aorta	Aorta
6	chr3:156059000-156060000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:156059200-156060000	Enhancers	Brain Anterior Caudate	brain
8	chr3:156059600-156060400	Enhancers	Primary B cells from peripheral blood	blood
9	chr3:156059800-156060200	Enhancers	GM12878-XiMat	blood

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