Variant report

Variant	rs9844584
Chromosome Location	chr3:156019961-156019962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12053873	1.00[CHB][hapmap]
rs12163648	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs13320345	1.00[CHB][hapmap]
rs13321669	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13323310	1.00[CHB][hapmap]
rs16825979	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16825997	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs16826014	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs2167145	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28623610	0.93[EUR][1000 genomes]
rs4630897	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs6441055	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441060	1.00[CHB][hapmap]
rs6762484	1.00[CHB][hapmap]
rs6766110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6766215	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6773597	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs73014142	0.92[ASN][1000 genomes]
rs73014145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73876148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7613022	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7616667	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625905	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs7626513	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs7639374	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs7641812	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs924352	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs9289963	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9289964	0.92[ASN][1000 genomes]
rs9812993	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9823449	1.00[CHB][hapmap]
rs9843163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap]
rs9848813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9858999	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9866817	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs9872906	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880939	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
2	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
3	chr3:156015800-156021600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:156016200-156020600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:156017200-156020800	Weak transcription	Left Ventricle	heart
6	chr3:156017400-156020800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:156017800-156020800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:156018000-156021200	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:156018400-156021200	Weak transcription	Brain Angular Gyrus	brain
10	chr3:156018600-156022200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:156019400-156021200	Weak transcription	Brain Anterior Caudate	brain
12	chr3:156019400-156021400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:156019600-156020000	Enhancers	Fetal Lung	lung
14	chr3:156019600-156020800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:156019600-156021000	Weak transcription	HUVEC	blood vessel
16	chr3:156019600-156021200	Weak transcription	Hela-S3	cervix
17	chr3:156019600-156021200	Weak transcription	NHDF-Ad	bronchial
18	chr3:156019600-156021400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:156019600-156021600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:156019600-156021600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr3:156019600-156022600	Enhancers	Adipose Nuclei	Adipose
22	chr3:156019600-156022800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:156019800-156020000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr3:156019800-156020800	Weak transcription	NHLF	lung
25	chr3:156019800-156021400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:156019800-156022000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr3:156019800-156022000	Weak transcription	Osteobl	bone
28	chr3:156019800-156022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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