Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12053873	1.00[CHB][hapmap]
rs12163648	1.00[CHB][hapmap]
rs13320345	1.00[CHB][hapmap]
rs13323310	1.00[CHB][hapmap]
rs16825979	1.00[CEU][hapmap]
rs16825997	1.00[CHB][hapmap]
rs16826004	0.84[EUR][1000 genomes]
rs16826014	1.00[CHB][hapmap]
rs3755628	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4630897	1.00[CHB][hapmap]
rs6441056	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6441057	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6441058	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6441060	1.00[CHB][hapmap]
rs6441061	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762484	1.00[CHB][hapmap]
rs6766110	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6766215	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6773597	1.00[CHB][hapmap]
rs7613022	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7625905	1.00[CHB][hapmap]
rs7626513	1.00[CHB][hapmap]
rs7639374	1.00[CHB][hapmap]
rs7641812	1.00[CHB][hapmap]
rs924352	1.00[CHB][hapmap]
rs9812993	1.00[CHB][hapmap]
rs9823449	1.00[CHB][hapmap]
rs9843163	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9844584	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9848813	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9858999	1.00[CHB][hapmap]
rs9866817	1.00[CHB][hapmap]
rs9872906	1.00[CEU][hapmap]
rs9880939	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156053000-156064800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156053200-156061600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:156058400-156060000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:156058400-156060000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:156058600-156071600	Weak transcription	Aorta	Aorta
6	chr3:156059000-156060000	Enhancers	Brain Inferior Temporal Lobe	brain

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