Variant report

Variant	rs12053873
Chromosome Location	chr3:156069434-156069435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156064694..156066364-chr3:156069401..156071214,2	K562	blood:
2	chr3:156068154..156070454-chr3:156076598..156078421,2	K562	blood:
3	chr3:156063000..156066364-chr3:156067532..156070901,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12163648	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13320345	1.00[CHB][hapmap]
rs13323310	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1375929	1.00[AMR][1000 genomes]
rs16825997	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16826014	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2167145	1.00[CHB][hapmap]
rs4630897	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55818638	1.00[ASN][1000 genomes]
rs57058377	1.00[AMR][1000 genomes]
rs61458860	1.00[ASN][1000 genomes]
rs6441055	0.84[ASN][1000 genomes]
rs6441056	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441057	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441058	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6441060	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6762484	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6766110	1.00[CHB][hapmap]
rs6766215	1.00[CHB][hapmap]
rs6771705	1.00[ASN][1000 genomes]
rs6773597	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs73014142	0.84[ASN][1000 genomes]
rs73017930	1.00[AMR][1000 genomes]
rs73017998	1.00[AMR][1000 genomes]
rs73876148	0.84[ASN][1000 genomes]
rs7613022	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7616667	0.84[ASN][1000 genomes]
rs7623380	1.00[ASN][1000 genomes]
rs7625905	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7626513	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7639374	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7641812	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs924352	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9289963	0.84[ASN][1000 genomes]
rs9289964	0.84[ASN][1000 genomes]
rs9812993	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9823449	1.00[CHB][hapmap]
rs9829670	1.00[ASN][1000 genomes]
rs9843163	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9844584	1.00[CHB][hapmap]
rs9848813	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9858999	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9866817	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9880939	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156058600-156071600	Weak transcription	Aorta	Aorta
2	chr3:156062400-156069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:156067000-156070600	Weak transcription	Right Atrium	heart
4	chr3:156067600-156069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:156069000-156070000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:156069200-156070000	Weak transcription	Left Ventricle	heart
7	chr3:156069400-156072600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156069400-156074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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