Variant report
| Variant | rs55818638 |
|---|---|
| Chromosome Location | chr3:156065404-156065405 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156060114..156062133-chr3:156063851..156066009,3 | K562 | blood: | |
| 2 | chr3:156064694..156066364-chr3:156069401..156071214,2 | K562 | blood: | |
| 3 | chr3:156063000..156066364-chr3:156067532..156070901,4 | K562 | blood: | |
| 4 | chr3:156047457..156049011-chr3:156064296..156066082,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs12053873 | 1.00[ASN][1000 genomes] |
| rs12163648 | 0.84[ASN][1000 genomes] |
| rs13323310 | 1.00[ASN][1000 genomes] |
| rs16825997 | 0.84[ASN][1000 genomes] |
| rs16826014 | 1.00[ASN][1000 genomes] |
| rs4630897 | 1.00[ASN][1000 genomes] |
| rs61458860 | 1.00[ASN][1000 genomes] |
| rs6441055 | 0.84[ASN][1000 genomes] |
| rs6441056 | 0.84[ASN][1000 genomes] |
| rs6441057 | 0.84[ASN][1000 genomes] |
| rs6441058 | 0.84[ASN][1000 genomes] |
| rs6441060 | 1.00[ASN][1000 genomes] |
| rs6762484 | 1.00[ASN][1000 genomes] |
| rs6771705 | 1.00[ASN][1000 genomes] |
| rs6773597 | 0.84[ASN][1000 genomes] |
| rs73014142 | 0.84[ASN][1000 genomes] |
| rs73876148 | 0.84[ASN][1000 genomes] |
| rs7613022 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7616667 | 0.84[ASN][1000 genomes] |
| rs7623380 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7625905 | 0.84[ASN][1000 genomes] |
| rs7626513 | 0.84[ASN][1000 genomes] |
| rs7638719 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7639374 | 0.84[ASN][1000 genomes] |
| rs7641812 | 0.84[ASN][1000 genomes] |
| rs924352 | 0.84[ASN][1000 genomes] |
| rs9289963 | 0.84[ASN][1000 genomes] |
| rs9289964 | 0.84[ASN][1000 genomes] |
| rs9812993 | 0.84[ASN][1000 genomes] |
| rs9829670 | 1.00[ASN][1000 genomes] |
| rs9843163 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9848813 | 0.84[ASN][1000 genomes] |
| rs9858999 | 0.84[ASN][1000 genomes] |
| rs9866817 | 0.84[ASN][1000 genomes] |
| rs9880939 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014755 | chr3:155889430-156411894 | Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv877682 | chr3:156019961-156077514 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1810325 | chr3:156061497-156081835 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156058600-156071600 | Weak transcription | Aorta | Aorta |
| 2 | chr3:156062400-156069600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
