Variant report

Variant	rs6441058
Chromosome Location	chr3:156033056-156033057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156026382..156029375-chr3:156031485..156033087,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12053873	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12163648	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13320345	1.00[CHB][hapmap]
rs13321669	1.00[EUR][1000 genomes]
rs13323310	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16825979	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16825997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16826014	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs2167145	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28623610	0.93[EUR][1000 genomes]
rs4630897	1.00[CHB][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs55818638	0.84[ASN][1000 genomes]
rs61458860	0.84[ASN][1000 genomes]
rs6441055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441060	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6762484	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6766110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6766215	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6771705	0.84[ASN][1000 genomes]
rs6773597	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73014142	1.00[ASN][1000 genomes]
rs73014145	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73876148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7616667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623380	0.84[ASN][1000 genomes]
rs7625905	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7626513	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7639374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7641812	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs924352	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9289963	1.00[ASN][1000 genomes]
rs9289964	1.00[ASN][1000 genomes]
rs9812993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9823449	1.00[CHB][hapmap]
rs9829670	0.84[ASN][1000 genomes]
rs9843163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.84[ASN][1000 genomes]
rs9844584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9848813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9858999	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9866817	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9872906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9880939	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
5	chr3:156029800-156034400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:156029800-156035000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:156030000-156035000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:156030000-156035200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:156030000-156035400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:156030000-156035400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:156030000-156035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:156030200-156034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:156030600-156036400	Enhancers	Hela-S3	cervix
14	chr3:156030800-156035600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:156031200-156033200	Enhancers	NHEK	skin
16	chr3:156031200-156033400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:156031800-156034400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:156032000-156035000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:156032000-156035200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:156032200-156033600	Enhancers	HUVEC	blood vessel
21	chr3:156032600-156033200	Enhancers	HMEC	breast
22	chr3:156032800-156033200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:156033000-156033200	Enhancers	Gastric	stomach
24	chr3:156033000-156034400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links