Variant report

Variant	rs16825979
Chromosome Location	chr3:156012829-156012830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13321669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167145	1.00[CEU][hapmap]
rs28623610	0.93[EUR][1000 genomes]
rs6441055	1.00[EUR][1000 genomes]
rs6441056	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441057	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6441058	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6766110	1.00[CEU][hapmap]
rs6766215	1.00[CEU][hapmap]
rs73014145	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73876148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7613022	1.00[CEU][hapmap]
rs7616667	1.00[EUR][1000 genomes]
rs9843163	1.00[CEU][hapmap]
rs9844584	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9848813	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9872906	1.00[CEU][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156008600-156013400	Active TSS	Brain Anterior Caudate	brain
2	chr3:156010000-156017000	Weak transcription	Right Atrium	heart
3	chr3:156010000-156024000	Weak transcription	Aorta	Aorta
4	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
5	chr3:156010200-156015400	Weak transcription	Fetal Brain Male	brain
6	chr3:156011800-156013000	Weak transcription	Brain Angular Gyrus	brain
7	chr3:156012200-156016800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:156012200-156016800	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:156012200-156017200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:156012800-156013400	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links