Variant report

Variant	rs9848813
Chromosome Location	chr3:156026261-156026262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156025571..156028067-chr3:156028592..156030728,2	MCF-7	breast:
2	chr3:156007615..156009116-chr3:156024508..156027118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12053873	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12163648	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13320345	1.00[CHB][hapmap]
rs13321669	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13323310	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs16825979	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16825997	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16826014	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2167145	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28623610	0.93[EUR][1000 genomes]
rs4630897	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs55818638	0.84[ASN][1000 genomes]
rs61458860	0.84[ASN][1000 genomes]
rs6441055	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441060	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6762484	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6766110	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6766215	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6771705	0.84[ASN][1000 genomes]
rs6773597	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73014142	1.00[ASN][1000 genomes]
rs73014145	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73876148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7616667	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623380	0.84[ASN][1000 genomes]
rs7625905	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7626513	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7639374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7641812	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs924352	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9289963	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9289964	1.00[ASN][1000 genomes]
rs9812993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9823449	1.00[CHB][hapmap]
rs9829670	0.84[ASN][1000 genomes]
rs9843163	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9844584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9858999	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9866817	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9872906	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880939	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022400-156026400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:156022400-156029200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:156023800-156029200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:156024400-156026600	Enhancers	HUVEC	blood vessel
8	chr3:156025000-156026400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:156025200-156026400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156025400-156026400	Enhancers	Hela-S3	cervix
11	chr3:156025400-156026400	Enhancers	NHEK	skin
12	chr3:156025600-156026400	Enhancers	Aorta	Aorta
13	chr3:156025800-156026400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:156025800-156029200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:156026000-156026400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr3:156026000-156026400	Enhancers	Gastric	stomach
17	chr3:156026000-156027600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:156026000-156031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:156026000-156031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:156026200-156026400	Weak transcription	Left Ventricle	heart
21	chr3:156026200-156026400	Enhancers	Ovary	ovary
22	chr3:156026200-156026400	Enhancers	Pancreas	Pancrea
23	chr3:156026200-156027200	Weak transcription	Fetal Heart	heart
24	chr3:156026200-156031200	Weak transcription	HMEC	breast

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