Variant report

Variant	rs28623610
Chromosome Location	chr3:156069872-156069873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13321669	0.93[EUR][1000 genomes]
rs16825979	0.93[EUR][1000 genomes]
rs6441055	0.93[EUR][1000 genomes]
rs6441056	0.93[EUR][1000 genomes]
rs6441057	0.93[EUR][1000 genomes]
rs6441058	0.93[EUR][1000 genomes]
rs73014145	0.93[EUR][1000 genomes]
rs73876148	0.93[EUR][1000 genomes]
rs7616667	0.93[EUR][1000 genomes]
rs9844584	0.93[EUR][1000 genomes]
rs9848813	0.93[EUR][1000 genomes]
rs9872906	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1810325	chr3:156061497-156081835	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156058600-156071600	Weak transcription	Aorta	Aorta
2	chr3:156067000-156070600	Weak transcription	Right Atrium	heart
3	chr3:156069000-156070000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:156069200-156070000	Weak transcription	Left Ventricle	heart
5	chr3:156069400-156072600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:156069400-156074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:156069800-156070200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:156069800-156076000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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