Variant report

Variant	rs16827186
Chromosome Location	chr3:156790185-156790186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11921057	1.00[AMR][1000 genomes]
rs1482867	1.00[AMR][1000 genomes]
rs16827388	1.00[AMR][1000 genomes]
rs57676345	1.00[AMR][1000 genomes]
rs59516322	1.00[AMR][1000 genomes]
rs73025844	1.00[AMR][1000 genomes]
rs73025863	1.00[AMR][1000 genomes]
rs73025882	1.00[AMR][1000 genomes]
rs73025895	1.00[AMR][1000 genomes]
rs73025901	1.00[AMR][1000 genomes]
rs73027741	1.00[AMR][1000 genomes]
rs73027753	1.00[AMR][1000 genomes]
rs73027764	1.00[AMR][1000 genomes]
rs7612563	1.00[AMR][1000 genomes]
rs7635251	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7645166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156782400-156794000	Weak transcription	Right Atrium	heart
2	chr3:156782600-156795000	Weak transcription	Fetal Heart	heart
3	chr3:156782800-156795000	Weak transcription	Adipose Nuclei	Adipose
4	chr3:156783400-156793400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:156785200-156791400	Weak transcription	NHLF	lung
6	chr3:156785200-156791600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:156785200-156791600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:156785200-156791600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:156785200-156793400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:156786000-156791600	Weak transcription	NH-A	brain
11	chr3:156788200-156794800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:156788600-156790800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156788800-156791600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:156788800-156793600	Weak transcription	HSMM	muscle
15	chr3:156789000-156791400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:156789000-156791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:156789000-156791400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:156789000-156791400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:156789000-156791400	Weak transcription	NHDF-Ad	bronchial
20	chr3:156789000-156791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:156789000-156791600	Weak transcription	Brain Anterior Caudate	brain
22	chr3:156789000-156791800	Weak transcription	Pancreas	Pancrea
23	chr3:156789000-156793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:156789000-156793400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:156789000-156793400	Weak transcription	Osteobl	bone
26	chr3:156789000-156805000	Weak transcription	Aorta	Aorta
27	chr3:156789200-156791400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:156789200-156793600	Weak transcription	Liver	Liver
29	chr3:156789200-156799200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:156789400-156791600	Weak transcription	Brain Angular Gyrus	brain
31	chr3:156789800-156791600	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:156789800-156793400	Weak transcription	GM12878-XiMat	blood
33	chr3:156790000-156791400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:156790000-156793400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links