Variant report

Variant	rs17238588
Chromosome Location	chr3:156126904-156126905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16826030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826100	1.00[EUR][1000 genomes]
rs16826101	1.00[EUR][1000 genomes]
rs16826111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17317344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3856672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441068	0.91[EUR][1000 genomes]
rs6791462	1.00[EUR][1000 genomes]
rs6796127	0.91[EUR][1000 genomes]
rs73873328	0.91[EUR][1000 genomes]
rs73873329	0.91[EUR][1000 genomes]
rs9823622	0.91[EUR][1000 genomes]
rs9824778	0.81[EUR][1000 genomes]
rs9855009	0.91[EUR][1000 genomes]
rs9867561	0.91[EUR][1000 genomes]
rs9872444	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156123200-156135000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:156123200-156135000	Weak transcription	Brain Anterior Caudate	brain
4	chr3:156126800-156127600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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