Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156124778..156126773-chr3:156391884..156393678,2	MCF-7	breast:
2	chr3:156118242..156120907-chr3:156123155..156126969,3	K562	blood:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12054064	1.00[CEU][hapmap]
rs1357434	1.00[CEU][hapmap]
rs16826030	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16826100	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16826111	1.00[EUR][1000 genomes]
rs17238588	1.00[EUR][1000 genomes]
rs17317344	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2272112	1.00[CEU][hapmap]
rs3755633	1.00[CEU][hapmap]
rs3856672	1.00[EUR][1000 genomes]
rs6441068	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6441072	1.00[CEU][hapmap]
rs6791462	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6796127	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs73873328	0.91[EUR][1000 genomes]
rs73873329	0.91[EUR][1000 genomes]
rs9823622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9824778	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs9855009	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9867561	0.91[EUR][1000 genomes]
rs9872444	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156123200-156135000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:156123200-156135000	Weak transcription	Brain Anterior Caudate	brain

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