Variant report

Variant	rs3772267
Chromosome Location	chr3:156180366-156180367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156177261..156180742-chr3:156201480..156205067,4	K562	blood:
2	chr3:156180313..156182114-chr3:156187638..156189146,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1106297	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs1106299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12493762	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1357434	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2293196	1.00[CHB][hapmap];0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs3755632	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs3755633	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3772263	0.82[ASN][1000 genomes]
rs3796168	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289967	0.90[CHB][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156173000-156180400	Enhancers	K562	blood
2	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156175600-156180400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:156175600-156180600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:156175800-156180600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:156176200-156180400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:156177000-156180600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
9	chr3:156177200-156180400	Enhancers	Stomach Smooth Muscle	stomach
10	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:156177600-156182800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156178400-156180800	Weak transcription	Aorta	Aorta
13	chr3:156179000-156180400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:156179200-156180600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:156179200-156183000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:156179400-156181000	Weak transcription	Left Ventricle	heart
17	chr3:156180000-156183000	Weak transcription	Fetal Heart	heart
18	chr3:156180000-156183800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:156180000-156186000	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:156180200-156182000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:156180200-156182200	Enhancers	HUES48 Cell Line	embryonic stem cell

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