Variant report

Variant	rs9826583
Chromosome Location	chr3:156204869-156204870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156203455..156205885-chr3:156206107..156208992,3	K562	blood:
2	chr3:156202281..156205237-chr3:156224635..156226769,2	MCF-7	breast:
3	chr3:156199865..156202748-chr3:156204811..156207685,3	K562	blood:
4	chr3:156177261..156180742-chr3:156201480..156205067,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1106297	1.00[EUR][1000 genomes]
rs1106299	1.00[EUR][1000 genomes]
rs11924393	1.00[EUR][1000 genomes]
rs11924460	1.00[EUR][1000 genomes]
rs11928395	1.00[EUR][1000 genomes]
rs12493762	1.00[EUR][1000 genomes]
rs12496391	1.00[EUR][1000 genomes]
rs2293196	1.00[EUR][1000 genomes]
rs3755632	1.00[EUR][1000 genomes]
rs3772263	1.00[EUR][1000 genomes]
rs56115936	0.91[ASN][1000 genomes]
rs6784889	0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73025753	0.91[ASN][1000 genomes]
rs73875705	0.91[ASN][1000 genomes]
rs73875706	0.91[ASN][1000 genomes]
rs7611810	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9826597	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156202200-156206800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:156202200-156207000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:156202400-156206400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156202600-156206200	Weak transcription	Aorta	Aorta
5	chr3:156202600-156206200	Weak transcription	Osteobl	bone
6	chr3:156202600-156206400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156202600-156207000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:156202600-156207000	Weak transcription	NHEK	skin
9	chr3:156202600-156225200	Weak transcription	Left Ventricle	heart
10	chr3:156202800-156206200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156202800-156206200	Weak transcription	NH-A	brain
12	chr3:156202800-156206400	Weak transcription	HSMM	muscle
13	chr3:156202800-156206400	Weak transcription	NHDF-Ad	bronchial
14	chr3:156202800-156206600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:156202800-156206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:156202800-156206800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:156202800-156209600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:156202800-156209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:156203000-156205400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:156203000-156206400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:156203000-156210000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:156203200-156206000	Weak transcription	HUVEC	blood vessel
23	chr3:156203400-156208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:156203600-156206800	Weak transcription	GM12878-XiMat	blood
25	chr3:156204400-156207000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:156204600-156205600	Weak transcription	K562	blood
27	chr3:156204600-156206000	Weak transcription	HSMMtube	muscle
28	chr3:156204800-156206000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links