Variant report

Variant	rs56115936
Chromosome Location	chr3:156210869-156210870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6784889	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875705	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73875706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611810	1.00[ASN][1000 genomes]
rs9826583	0.91[ASN][1000 genomes]
rs9826597	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156202600-156225200	Weak transcription	Left Ventricle	heart
2	chr3:156208000-156214600	Weak transcription	NH-A	brain
3	chr3:156208200-156211400	Weak transcription	GM12878-XiMat	blood
4	chr3:156209000-156211800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:156209200-156214400	Weak transcription	HUVEC	blood vessel
6	chr3:156209400-156212800	Enhancers	HSMM	muscle
7	chr3:156209600-156211800	Enhancers	Colon Smooth Muscle	Colon
8	chr3:156209800-156212000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:156210000-156211600	Enhancers	Osteobl	bone
10	chr3:156210000-156211800	Enhancers	Stomach Smooth Muscle	stomach
11	chr3:156210000-156212000	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:156210200-156211000	Enhancers	Aorta	Aorta
13	chr3:156210200-156211000	Enhancers	K562	blood
14	chr3:156210200-156211200	Enhancers	NHDF-Ad	bronchial
15	chr3:156210200-156212000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:156210400-156211000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr3:156210400-156212800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:156210600-156212800	Enhancers	HSMMtube	muscle
19	chr3:156210800-156212200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links