Variant report

Variant	rs6784889
Chromosome Location	chr3:156210222-156210223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16826315	1.00[CEU][hapmap]
rs56115936	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025753	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875705	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73875706	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611810	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[ASN][1000 genomes]
rs9826583	0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9826597	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156202600-156225200	Weak transcription	Left Ventricle	heart
2	chr3:156207800-156210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:156208000-156214600	Weak transcription	NH-A	brain
4	chr3:156208200-156211400	Weak transcription	GM12878-XiMat	blood
5	chr3:156209000-156211800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:156209200-156214400	Weak transcription	HUVEC	blood vessel
7	chr3:156209400-156212800	Enhancers	HSMM	muscle
8	chr3:156209600-156211800	Enhancers	Colon Smooth Muscle	Colon
9	chr3:156209800-156212000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:156210000-156210400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:156210000-156210600	Flanking Active TSS	HSMMtube	muscle
12	chr3:156210000-156210800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:156210000-156211600	Enhancers	Osteobl	bone
14	chr3:156210000-156211800	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:156210000-156212000	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:156210200-156211000	Enhancers	Aorta	Aorta
17	chr3:156210200-156211000	Enhancers	K562	blood
18	chr3:156210200-156211200	Enhancers	NHDF-Ad	bronchial
19	chr3:156210200-156212000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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