Variant report

Variant	rs7611810
Chromosome Location	chr3:156207628-156207629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156201110..156202990-chr3:156206149..156207794,2	MCF-7	breast:
2	chr3:156199865..156202748-chr3:156204811..156207685,3	K562	blood:
3	chr3:156203455..156205885-chr3:156206107..156208992,3	K562	blood:
4	chr3:156197348..156199661-chr3:156207487..156209135,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16826315	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs56115936	1.00[ASN][1000 genomes]
rs6784889	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[ASN][1000 genomes]
rs73025753	1.00[ASN][1000 genomes]
rs73873400	0.93[EUR][1000 genomes]
rs73873402	0.93[EUR][1000 genomes]
rs73875705	1.00[ASN][1000 genomes]
rs73875706	1.00[ASN][1000 genomes]
rs9826583	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9826597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156202600-156225200	Weak transcription	Left Ventricle	heart
2	chr3:156202800-156209600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:156202800-156209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:156203000-156210000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:156203400-156208800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:156205400-156209400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:156205600-156209200	Enhancers	K562	blood
8	chr3:156206000-156209200	Enhancers	HUVEC	blood vessel
9	chr3:156206200-156208000	Enhancers	NH-A	brain
10	chr3:156206200-156208200	Enhancers	Osteobl	bone
11	chr3:156206400-156208000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:156206400-156208000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:156206400-156208200	Enhancers	HSMM	muscle
14	chr3:156206400-156208200	Enhancers	NHDF-Ad	bronchial
15	chr3:156206600-156208000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:156206600-156210200	Weak transcription	Aorta	Aorta
17	chr3:156206800-156207800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:156206800-156207800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:156206800-156207800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:156206800-156207800	Enhancers	GM12878-XiMat	blood
21	chr3:156206800-156208000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:156207000-156207800	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:156207000-156207800	Enhancers	NHEK	skin
24	chr3:156207400-156207800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:156207400-156208200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:156207600-156208200	Flanking Active TSS	HSMMtube	muscle

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