Variant report

Variant	rs11924460
Chromosome Location	chr3:156158675-156158676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513488	0.92[JPT][hapmap]
rs1106297	1.00[EUR][1000 genomes]
rs1106299	1.00[EUR][1000 genomes]
rs11915154	1.00[JPT][hapmap]
rs11924393	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11928395	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12493762	1.00[EUR][1000 genomes]
rs12496391	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13324766	0.80[JPT][hapmap]
rs13324809	0.83[JPT][hapmap]
rs2293196	1.00[EUR][1000 genomes]
rs3732515	0.83[JPT][hapmap]
rs3755632	1.00[EUR][1000 genomes]
rs3772263	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6772280	0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs6796811	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs9826583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156150800-156160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:156158000-156160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:156158600-156160000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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