Variant report

Variant	rs11928395
Chromosome Location	chr3:156158538-156158539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10513488	0.84[JPT][hapmap]
rs1106297	1.00[EUR][1000 genomes]
rs1106299	1.00[EUR][1000 genomes]
rs11915154	0.92[JPT][hapmap]
rs11917301	0.85[CHD][hapmap]
rs11924393	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11924460	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12493762	0.84[CHB][hapmap];1.00[EUR][1000 genomes]
rs12496391	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2293196	1.00[EUR][1000 genomes]
rs3755632	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs3772263	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6772280	0.91[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6796811	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs9826583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156150800-156160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:156158000-156158600	Enhancers	Colon Smooth Muscle	Colon
5	chr3:156158000-156160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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