Variant report

Variant	rs958129
Chromosome Location	chr3:156160384-156160385
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10428085	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10428233	0.94[TSI][hapmap]
rs10513488	0.92[GIH][hapmap]
rs11917301	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap]
rs13324809	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16826199	0.94[TSI][hapmap]
rs3732515	0.94[TSI][hapmap];0.80[YRI][hapmap]
rs4574239	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6797169	0.94[TSI][hapmap]
rs9289968	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
2	chr3:156150800-156160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:156157200-156164000	Enhancers	Rectal Smooth Muscle	rectum
4	chr3:156158000-156160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:156160000-156160400	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:156160000-156162800	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links