Variant report

Variant	rs55754499
Chromosome Location	chr3:156167352-156167353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:156167220-156167370	HCPEpiC	choroid plexus:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156166581..156169828-chr3:156169890..156173085,3	K562	blood:
2	chr3:156165868..156167744-chr3:156256177..156258339,2	K562	blood:
3	chr3:156166753..156169667-chr3:156173519..156175055,2	K562	blood:
4	chr3:156166346..156168652-chr3:156168846..156171078,2	MCF-7	breast:
5	chr3:156165003..156167494-chr3:156226890..156229666,2	K562	blood:
6	chr3:156105641..156107748-chr3:156165114..156167904,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10428233	0.89[EUR][1000 genomes]
rs11922703	0.84[AFR][1000 genomes]
rs11922769	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16826198	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16826199	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16826202	0.89[EUR][1000 genomes]
rs3732515	0.91[EUR][1000 genomes]
rs3755631	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs55671429	0.83[EUR][1000 genomes]
rs55754142	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55896573	0.91[EUR][1000 genomes]
rs56059225	0.89[EUR][1000 genomes]
rs56261626	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56762981	0.89[EUR][1000 genomes]
rs6797169	0.87[EUR][1000 genomes]
rs73873371	0.87[EUR][1000 genomes]
rs73873379	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73873383	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156162200-156169400	Weak transcription	Aorta	Aorta
2	chr3:156162600-156174800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:156162800-156167600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:156162800-156168200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156162800-156169000	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:156164000-156168800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:156164200-156167600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:156166000-156167800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:156166600-156167600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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