Variant report

Variant	rs73873389
Chromosome Location	chr3:156181246-156181247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156180313..156182114-chr3:156187638..156189146,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13315111	0.98[EUR][1000 genomes]
rs13315136	0.98[EUR][1000 genomes]
rs13323374	0.98[EUR][1000 genomes]
rs16826288	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41267915	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801966	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73023974	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629988	0.87[EUR][1000 genomes]
rs7641703	0.87[EUR][1000 genomes]
rs7648656	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841854	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156174800-156192600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:156177000-156183200	Weak transcription	Pancreas	Pancrea
3	chr3:156177200-156189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156177600-156182800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156179200-156183000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:156180000-156183000	Weak transcription	Fetal Heart	heart
7	chr3:156180000-156183800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:156180000-156186000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:156180200-156182000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:156180200-156182200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:156180400-156181400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:156180400-156181800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:156180400-156182200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:156180600-156182000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:156180600-156182200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr3:156180600-156182200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:156180800-156181800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:156181000-156181400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:156181000-156181400	Flanking Active TSS	K562	blood
20	chr3:156181200-156182000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:156181200-156182000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:156181200-156182200	Enhancers	Aorta	Aorta

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