Variant report

Variant	rs73023974
Chromosome Location	chr3:156196466-156196467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156194846..156197692-chr3:156202889..156204599,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13315111	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13315136	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13323374	0.96[EUR][1000 genomes]
rs16826288	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826289	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41267915	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58374771	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770093	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777276	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801966	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73873389	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629988	0.85[EUR][1000 genomes]
rs7641703	0.85[EUR][1000 genomes]
rs7648656	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9841854	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156183400-156200400	Weak transcription	HSMM	muscle
2	chr3:156187800-156200800	Weak transcription	HSMMtube	muscle
3	chr3:156190000-156202400	Weak transcription	Aorta	Aorta
4	chr3:156190800-156196800	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:156191400-156196800	Weak transcription	Fetal Stomach	stomach
6	chr3:156192400-156198800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:156193000-156198600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:156193200-156199400	Weak transcription	K562	blood
9	chr3:156193200-156200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:156194600-156197600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156195400-156197800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:156195400-156200000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:156195600-156196600	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr3:156195800-156196800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:156195800-156200800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:156195800-156200800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:156195800-156200800	Weak transcription	NHDF-Ad	bronchial
18	chr3:156195800-156200800	Weak transcription	Osteobl	bone
19	chr3:156195800-156201000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:156195800-156201000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:156196200-156197200	Enhancers	Fetal Brain Male	brain
22	chr3:156196200-156197200	Enhancers	Fetal Brain Female	brain
23	chr3:156196400-156201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:156196400-156201800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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