Variant report

Variant	rs2142143
Chromosome Location	chr8:91413699-91413700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10090783	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10091653	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10104773	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10216547	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10481088	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10956649	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11778003	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11993968	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11998437	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13260448	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1983531	0.91[EUR][1000 genomes]
rs2103443	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2178858	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2205156	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2339147	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2339148	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2339150	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2339152	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28771235	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28775309	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2879359	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2879360	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34116094	0.83[EUR][1000 genomes]
rs4262291	0.85[EUR][1000 genomes]
rs4301407	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4326348	0.85[EUR][1000 genomes]
rs4345614	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4383933	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4403455	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4443622	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4621769	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4629920	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4734148	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4734907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734928	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4734969	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4734974	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734986	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6985388	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7010132	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7015821	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7816110	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7820382	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7845025	0.81[EUR][1000 genomes]
rs909191	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs926094	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9297851	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9643274	0.83[AMR][1000 genomes]
rs9643275	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9643276	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9643277	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9643280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9918806	0.82[EUR][1000 genomes]
rs9918885	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9987396	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3525740	chr8:91410176-91416274	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3525742	chr8:91410176-91416274	Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3480539	chr8:91410424-91414242	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3480540	chr8:91410587-91414130	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91395000-91433400	Weak transcription	K562	blood

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