Variant report

Variant	rs4301407
Chromosome Location	chr8:91434616-91434617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91430244..91432970-chr8:91433981..91436818,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM64-4	chr8:91434573-91436368	NONHSAT127648

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10090783	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10091653	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10104773	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10216547	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1028252	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1028253	0.97[ASN][1000 genomes]
rs10481088	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956639	0.85[ASN][1000 genomes]
rs10956649	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11778003	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11783777	0.83[ASN][1000 genomes]
rs11786139	0.83[ASN][1000 genomes]
rs11993968	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11998437	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13250247	0.85[ASN][1000 genomes]
rs13260448	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1983531	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2091901	0.85[ASN][1000 genomes]
rs2103442	0.85[ASN][1000 genomes]
rs2103443	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2103445	0.80[ASN][1000 genomes]
rs2142143	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2142144	0.85[ASN][1000 genomes]
rs2178858	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2205156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2339147	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2339148	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2339149	0.84[ASN][1000 genomes]
rs2339150	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2339151	0.85[ASN][1000 genomes]
rs2339152	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28771235	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28775309	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2879359	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2879360	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34116094	0.80[AMR][1000 genomes]
rs34309716	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34359428	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35349778	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016622	0.85[ASN][1000 genomes]
rs36022382	0.85[ASN][1000 genomes]
rs4345614	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4346959	0.83[ASN][1000 genomes]
rs4383933	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4403455	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4412335	0.82[ASN][1000 genomes]
rs4443622	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4621769	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4629920	0.89[AMR][1000 genomes]
rs4734148	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734907	0.81[AMR][1000 genomes]
rs4734928	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4734968	0.84[ASN][1000 genomes]
rs4734969	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4734974	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734986	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6985388	0.81[AMR][1000 genomes]
rs7010132	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015821	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7816110	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7820382	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7845025	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs909191	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs926094	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9297851	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643275	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9643276	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9643277	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9643280	0.81[AMR][1000 genomes]
rs9918806	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9918885	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9987396	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981884	chr8:91420804-91441125	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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