Variant report

Variant	rs2142236
Chromosome Location	chr21:15826284-15826285
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17002643	1.00[CHB][hapmap]
rs17002662	1.00[CHB][hapmap]
rs17240438	1.00[CHB][hapmap]
rs17306192	1.00[CHB][hapmap]
rs17306283	1.00[ASN][1000 genomes]
rs2822639	1.00[CHB][hapmap]
rs2822665	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2822671	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61440848	1.00[ASN][1000 genomes]
rs9981270	0.86[ASN][1000 genomes]
rs9983043	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv966029	chr21:15818808-15833739	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15823600-15826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:15823800-15827400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr21:15823800-15828000	Flanking Active TSS	K562	blood
4	chr21:15824000-15828000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr21:15824000-15828200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr21:15824000-15828600	Enhancers	Primary hematopoietic stem cells	blood
7	chr21:15824200-15828200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr21:15825000-15827600	Flanking Active TSS	GM12878-XiMat	blood
9	chr21:15825400-15826600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr21:15825600-15826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr21:15825600-15826800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr21:15826000-15827000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr21:15826200-15827400	Enhancers	Fetal Intestine Large	intestine
14	chr21:15826200-15827400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr21:15826200-15827400	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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