Variant report

Variant	rs2145435
Chromosome Location	chr6:36914770-36914771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36912555..36915660-chr6:36921519..36924285,4	K562	blood:

Variant related genes	Relation type
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2145436	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2180778	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs57336743	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs58088068	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs60568951	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs60607208	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs60875770	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62406494	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7740320	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7753241	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7759265	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
4	chr6:36908000-36915200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:36910800-36916000	Weak transcription	Hela-S3	cervix
6	chr6:36912600-36915000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:36912600-36915400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:36912800-36915200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:36913200-36917000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:36913800-36916000	Enhancers	Fetal Thymus	thymus
11	chr6:36914000-36915400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:36914000-36915800	Enhancers	Thymus	Thymus
13	chr6:36914200-36915400	Enhancers	Brain Substantia Nigra	brain
14	chr6:36914200-36915800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:36914200-36916600	Enhancers	Primary T cells from cord blood	blood
16	chr6:36914200-36916600	Enhancers	Dnd41	blood
17	chr6:36914200-36916800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:36914400-36915600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:36914400-36915800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:36914400-36916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:36914400-36916200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:36914400-36917200	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:36914600-36914800	Enhancers	Brain Anterior Caudate	brain
26	chr6:36914600-36915400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:36914600-36915400	Weak transcription	HMEC	breast
28	chr6:36914600-36916000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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