Variant report

Variant	rs60875770
Chromosome Location	chr6:36915662-36915663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:36915572-36915706	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTCH1-1	chr6:36915528-36916894	ucscGeneNc_uc003omt_1

Variant related genes	Relation type
ENSG00000232598	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2145435	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2145436	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2180778	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs57336743	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs58088068	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs60568951	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs60607208	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs62406494	0.95[EUR][1000 genomes]
rs7740320	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7753241	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7759265	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
2	chr6:36910800-36916000	Weak transcription	Hela-S3	cervix
3	chr6:36913200-36917000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:36913800-36916000	Enhancers	Fetal Thymus	thymus
5	chr6:36914000-36915800	Enhancers	Thymus	Thymus
6	chr6:36914200-36915800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:36914200-36916600	Enhancers	Primary T cells from cord blood	blood
8	chr6:36914200-36916600	Enhancers	Dnd41	blood
9	chr6:36914200-36916800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:36914400-36915800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:36914400-36916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:36914400-36916200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:36914400-36917200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:36914600-36916000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:36914800-36915800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:36915000-36916200	Enhancers	Brain Hippocampus Middle	brain
19	chr6:36915000-36916400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:36915000-36916600	Enhancers	Primary B cells from cord blood	blood
21	chr6:36915200-36916200	Enhancers	Brain Anterior Caudate	brain
22	chr6:36915200-36916400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:36915200-36917000	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:36915400-36915800	Enhancers	Brain Angular Gyrus	brain
25	chr6:36915400-36915800	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr6:36915400-36915800	Flanking Active TSS	Brain Substantia Nigra	brain
27	chr6:36915400-36916000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:36915400-36916000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:36915400-36916000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
30	chr6:36915400-36916200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:36915400-36916200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:36915400-36916200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr6:36915400-36916200	Enhancers	HMEC	breast
34	chr6:36915400-36917800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:36915400-36918000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:36915600-36916000	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:36915600-36916000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:36915600-36916200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:36915600-36916200	Enhancers	Pancreas	Pancrea
40	chr6:36915600-36916400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:36915600-36917200	Weak transcription	NHEK	skin

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