Variant report

Variant	rs2146718
Chromosome Location	chr9:95655247-95655248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10761181	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10821027	0.86[EUR][1000 genomes]
rs10821036	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10821037	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10992512	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10992513	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11792027	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12003227	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12685086	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16905839	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1966189	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1980698	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2281715	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2281716	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2281717	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4076630	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4625094	0.84[EUR][1000 genomes]
rs7030886	0.91[ASN][1000 genomes]
rs7044372	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7847040	0.80[ASN][1000 genomes]
rs7859380	0.86[EUR][1000 genomes]
rs7873954	0.85[EUR][1000 genomes]
rs9775485	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972781	chr9:95639258-95671744	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
4	nsv973756	chr9:95650489-95656277	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95653400-95656000	Enhancers	Fetal Intestine Large	intestine
2	chr9:95653400-95660600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95654000-95655400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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