Variant report

Variant	rs7873954
Chromosome Location	chr9:95591561-95591562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10123843	0.81[EUR][1000 genomes]
rs10123870	0.80[EUR][1000 genomes]
rs1022834	0.86[ASN][1000 genomes]
rs1047868	0.99[ASN][1000 genomes]
rs10739933	0.81[EUR][1000 genomes]
rs10739934	0.81[EUR][1000 genomes]
rs10761173	0.98[ASN][1000 genomes]
rs10821020	0.94[ASN][1000 genomes]
rs10821023	0.99[ASN][1000 genomes]
rs10821027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821030	0.80[EUR][1000 genomes]
rs10821031	0.81[EUR][1000 genomes]
rs10821035	0.80[EUR][1000 genomes]
rs10992484	0.99[ASN][1000 genomes]
rs12338961	0.81[EUR][1000 genomes]
rs13295605	0.93[ASN][1000 genomes]
rs1810685	0.99[ASN][1000 genomes]
rs1810686	0.98[ASN][1000 genomes]
rs1810687	0.99[ASN][1000 genomes]
rs1972214	0.99[ASN][1000 genomes]
rs1998483	0.99[ASN][1000 genomes]
rs2009444	0.99[ASN][1000 genomes]
rs2146718	0.85[EUR][1000 genomes]
rs4625094	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744148	0.99[ASN][1000 genomes]
rs4744150	0.81[EUR][1000 genomes]
rs6479434	0.81[EUR][1000 genomes]
rs7032277	0.80[EUR][1000 genomes]
rs7040645	0.81[EUR][1000 genomes]
rs7049211	0.98[ASN][1000 genomes]
rs7847713	0.81[EUR][1000 genomes]
rs7850036	0.99[ASN][1000 genomes]
rs7859380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7865255	0.99[ASN][1000 genomes]
rs7866339	0.98[ASN][1000 genomes]
rs7868123	0.99[ASN][1000 genomes]
rs7869498	0.98[ASN][1000 genomes]
rs7873021	0.81[EUR][1000 genomes]
rs7873259	0.95[ASN][1000 genomes]
rs7873819	0.99[ASN][1000 genomes]
rs9775485	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95583600-95596600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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