Variant report

Variant	rs2147694
Chromosome Location	chr6:55978888-55978889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2206678	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv1029182	chr6:55910866-55991956	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55920600-56018400	Weak transcription	Ovary	ovary
2	chr6:55967800-56008600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:55977400-55979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:55977800-55979200	ZNF genes & repeats	Fetal Muscle Leg	muscle
5	chr6:55977800-55990000	Weak transcription	Placenta	Placenta
6	chr6:55978000-55979200	Strong transcription	Stomach Smooth Muscle	stomach
7	chr6:55978000-55980000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:55978400-55979200	ZNF genes & repeats	Aorta	Aorta
9	chr6:55978400-55979200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr6:55978600-55979200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
11	chr6:55978600-55979200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
12	chr6:55978800-55979000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
13	chr6:55978800-55979200	ZNF genes & repeats	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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