Variant report

Variant	rs2149162
Chromosome Location	chr9:16464560-16464561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10733310	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10962426	0.87[EUR][1000 genomes]
rs10962427	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1927620	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1927621	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1927635	0.83[EUR][1000 genomes]
rs1927639	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1927640	0.80[ASN][1000 genomes]
rs1927641	0.80[ASN][1000 genomes]
rs2149161	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2149163	0.89[EUR][1000 genomes]
rs2382802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2382803	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7043935	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7046416	0.81[EUR][1000 genomes]
rs7856233	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7862481	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16458000-16470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16459600-16470800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:16459600-16482400	Weak transcription	A549	lung
5	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16459600-16500000	Weak transcription	NHLF	lung
7	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:16462000-16470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:16462000-16476400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr9:16462200-16470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:16462200-16474000	Weak transcription	Fetal Lung	lung
12	chr9:16463200-16468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:16463200-16470600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr9:16463200-16478000	Weak transcription	Ovary	ovary
15	chr9:16463200-16483800	Weak transcription	Fetal Stomach	stomach
16	chr9:16464000-16470400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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