Variant report

Variant	rs1927621
Chromosome Location	chr9:16453551-16453552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10733310	0.85[CEU][hapmap];0.80[CHB][hapmap];0.82[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10810565	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs10962426	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10962427	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12338207	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1887619	0.81[CEU][hapmap]
rs1927619	0.85[CHB][hapmap]
rs1927620	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1927635	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1927636	1.00[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1927639	0.89[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs1927640	0.80[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap]
rs1927641	0.82[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap]
rs1999032	0.86[CHB][hapmap]
rs2149161	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2149162	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2149163	0.85[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2382802	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2382803	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475054	0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs7021182	0.83[ASN][1000 genomes]
rs7026798	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs7035049	0.89[CHD][hapmap]
rs7035219	1.00[YRI][hapmap]
rs7043935	0.89[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7046026	0.84[CEU][hapmap];0.89[JPT][hapmap]
rs7046416	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853747	0.89[CHD][hapmap]
rs7856233	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7862481	0.81[AMR][1000 genomes]
rs9298764	0.81[CHB][hapmap];0.89[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16421800-16460400	Weak transcription	Aorta	Aorta
2	chr9:16437400-16459200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:16438800-16458800	Weak transcription	HSMM	muscle
4	chr9:16442800-16453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:16442800-16455800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:16445800-16453600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16446000-16458800	Weak transcription	NHLF	lung
8	chr9:16446400-16458800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:16447000-16457600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:16447000-16458400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16449200-16459200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:16451000-16456400	Weak transcription	Ovary	ovary
13	chr9:16451000-16458000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:16452200-16457800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:16452200-16458600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:16453200-16453800	Enhancers	GM12878-XiMat	blood

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