Variant report

Variant	rs1927636
Chromosome Location	chr9:16461429-16461430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1057383	1.00[ASW][hapmap]
rs10733310	0.85[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes]
rs10810565	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10962427	0.85[EUR][1000 genomes]
rs12338207	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1887619	0.81[CEU][hapmap]
rs1927620	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1927621	1.00[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1927635	0.95[EUR][1000 genomes]
rs1927639	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1927640	0.86[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1927641	0.95[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2149161	0.83[EUR][1000 genomes]
rs2149163	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2382802	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2382803	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6475054	0.85[CEU][hapmap];0.94[JPT][hapmap]
rs7021182	0.80[ASN][1000 genomes]
rs7026798	0.82[CHD][hapmap]
rs7035049	1.00[ASW][hapmap];0.84[CHD][hapmap]
rs7043935	0.89[CEU][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7046026	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs7046416	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7853747	0.84[CHD][hapmap]
rs7856233	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7862481	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9298764	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2761269	chr9:16454393-16462098	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457400-16462600	Enhancers	GM12878-XiMat	blood
2	chr9:16457600-16463200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16458000-16470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16458400-16463000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:16459200-16461600	Weak transcription	NH-A	brain
7	chr9:16459600-16461600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:16459600-16461600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:16459600-16461800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr9:16459600-16461800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:16459600-16470800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:16459600-16482400	Weak transcription	A549	lung
13	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:16459600-16500000	Weak transcription	NHLF	lung
15	chr9:16459800-16461600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:16459800-16461600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:16459800-16461600	Weak transcription	Esophagus	oesophagus
18	chr9:16459800-16461600	Weak transcription	Fetal Lung	lung
19	chr9:16459800-16462800	Weak transcription	HSMMtube	muscle
20	chr9:16460600-16461800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr9:16460600-16462000	Enhancers	Stomach Smooth Muscle	stomach
22	chr9:16460600-16463200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr9:16460600-16463200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:16460800-16463200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:16461000-16462800	Enhancers	Fetal Thymus	thymus
27	chr9:16461000-16463000	Enhancers	Rectal Smooth Muscle	rectum
28	chr9:16461000-16463200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:16461200-16461600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:16461200-16461800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:16461200-16461800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr9:16461200-16462000	Enhancers	Fetal Muscle Leg	muscle
33	chr9:16461200-16462400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:16461200-16463200	Enhancers	Colon Smooth Muscle	Colon
35	chr9:16461400-16461800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:16461400-16462000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:16461400-16462200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr9:16461400-16462400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr9:16461400-16463200	Enhancers	Fetal Stomach	stomach
40	chr9:16461400-16463200	Enhancers	Ovary	ovary

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