Variant report

Variant	rs1057383
Chromosome Location	chr9:16413632-16413633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10810563	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1927619	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs1927636	1.00[ASW][hapmap]
rs1999032	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4961488	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961717	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6475050	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6475052	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6475054	0.89[CEU][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs7026798	0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7035049	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7039703	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7043935	0.81[JPT][hapmap]
rs7046026	0.92[CEU][hapmap]
rs717267	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7853747	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9298764	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9406643	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
3	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:16407200-16417000	Weak transcription	HSMM	muscle
5	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
6	chr9:16410200-16414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:16410800-16415400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:16411200-16413800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:16411200-16418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:16411200-16419000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:16411400-16419000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:16411600-16418800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:16412200-16414400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:16412600-16414400	Enhancers	Fetal Intestine Large	intestine
15	chr9:16412600-16414800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:16412600-16414800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:16412800-16414000	Enhancers	NHDF-Ad	bronchial
18	chr9:16412800-16414000	Enhancers	Osteobl	bone
19	chr9:16412800-16414200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:16412800-16414400	Enhancers	Placenta	Placenta
21	chr9:16412800-16414400	Enhancers	HepG2	liver
22	chr9:16413000-16413800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:16413000-16413800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:16413000-16414000	Enhancers	Liver	Liver
25	chr9:16413000-16414200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:16413000-16414800	Flanking Active TSS	A549	lung
27	chr9:16413200-16414000	Enhancers	NHLF	lung
28	chr9:16413400-16413800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr9:16413400-16414800	Enhancers	Ovary	ovary
30	chr9:16413600-16413800	Bivalent/Poised TSS	Fetal Brain Male	brain
31	chr9:16413600-16414000	Flanking Active TSS	Fetal Lung	lung
32	chr9:16413600-16414200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:16413600-16414200	Bivalent Enhancer	Fetal Intestine Small	intestine
34	chr9:16413600-16414200	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:16413600-16414400	Enhancers	NH-A	brain

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