Variant report

Variant	rs1999032
Chromosome Location	chr9:16416995-16416996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1057383	0.85[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1927619	0.90[JPT][hapmap]
rs1927621	0.86[CHB][hapmap]
rs4961488	0.81[ASN][1000 genomes]
rs4961717	0.87[ASN][1000 genomes]
rs6475050	0.85[ASN][1000 genomes]
rs6475052	0.82[CEU][hapmap];0.80[AFR][1000 genomes]
rs6475054	0.86[CHB][hapmap];0.83[JPT][hapmap];0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7021182	0.80[ASN][1000 genomes]
rs7026798	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7035049	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7039703	0.81[ASN][1000 genomes]
rs7043935	0.83[JPT][hapmap]
rs7046416	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs717267	0.84[ASN][1000 genomes]
rs7853747	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9298764	0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9406643	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16407200-16417000	Weak transcription	HSMM	muscle
2	chr9:16411200-16418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16411200-16419000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:16411400-16419000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:16411600-16418800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:16414000-16417000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:16414000-16417200	Enhancers	Fetal Lung	lung
8	chr9:16414000-16418800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:16414200-16417200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:16414200-16421200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:16414400-16417200	Weak transcription	Adipose Nuclei	Adipose
12	chr9:16414400-16418600	Weak transcription	Fetal Intestine Large	intestine
13	chr9:16414400-16418800	Weak transcription	Placenta	Placenta
14	chr9:16414400-16421600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16414600-16421200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:16414800-16417000	Enhancers	A549	lung
17	chr9:16414800-16417200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:16414800-16418800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:16415200-16420800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:16415400-16425600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:16415600-16417200	Enhancers	Colon Smooth Muscle	Colon
22	chr9:16415800-16418000	Enhancers	Fetal Kidney	kidney
23	chr9:16416000-16417200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr9:16416000-16417200	Weak transcription	Fetal Stomach	stomach
25	chr9:16416000-16418200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr9:16416200-16417200	Weak transcription	Ovary	ovary
27	chr9:16416200-16417200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:16416200-16435400	Weak transcription	Fetal Muscle Leg	muscle
29	chr9:16416400-16417000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:16416400-16417000	Enhancers	Dnd41	blood
31	chr9:16416400-16417400	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr9:16416400-16417400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:16416400-16418000	Enhancers	HUVEC	blood vessel
34	chr9:16416400-16420800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr9:16416600-16417000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:16416600-16417000	Enhancers	Brain Germinal Matrix	brain
37	chr9:16416600-16417000	Enhancers	Osteobl	bone
38	chr9:16416600-16417200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:16416600-16417200	Enhancers	NHDF-Ad	bronchial
40	chr9:16416600-16417200	Enhancers	NHLF	lung
41	chr9:16416800-16417400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr9:16416800-16417400	Enhancers	NH-A	brain
43	chr9:16416800-16417600	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr9:16416800-16418000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:16416800-16418800	Enhancers	Primary T cells from cord blood	blood

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