Variant report

Variant	rs7853747
Chromosome Location	chr9:16411463-16411464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16409821..16411525-chr9:16413857..16415873,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1057383	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10810563	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1927619	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs1927621	0.89[CHD][hapmap]
rs1927636	0.84[CHD][hapmap]
rs1927640	0.83[CHD][hapmap]
rs1927641	0.83[CHD][hapmap]
rs1999032	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2149163	0.81[CHD][hapmap]
rs4961488	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4961717	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6475050	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475052	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6475054	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs7026798	0.92[CEU][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7035049	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7039703	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7043935	0.81[JPT][hapmap]
rs7046026	0.87[CEU][hapmap]
rs717267	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9298764	0.81[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9406643	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16400600-16413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16405800-16416400	Weak transcription	HUVEC	blood vessel
3	chr9:16407000-16412800	Weak transcription	Ovary	ovary
4	chr9:16407200-16415800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:16407200-16417000	Weak transcription	HSMM	muscle
6	chr9:16407400-16415800	Weak transcription	Fetal Kidney	kidney
7	chr9:16409800-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:16410000-16412000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:16410000-16412000	Flanking Active TSS	A549	lung
10	chr9:16410200-16411800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16410200-16414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr9:16410600-16411800	Enhancers	NHEK	skin
13	chr9:16410600-16413600	Enhancers	Fetal Lung	lung
14	chr9:16410800-16412000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:16410800-16415400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:16411000-16412000	Enhancers	NHLF	lung
17	chr9:16411200-16412600	Weak transcription	Fetal Intestine Large	intestine
18	chr9:16411200-16413800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:16411200-16418800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:16411200-16419000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:16411400-16412800	Weak transcription	NHDF-Ad	bronchial
22	chr9:16411400-16412800	Weak transcription	Osteobl	bone
23	chr9:16411400-16419000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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