Variant report
| Variant | rs2151459 |
|---|---|
| Chromosome Location | chr13:39846414-39846415 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1413052 | 0.80[EUR][1000 genomes] |
| rs1413053 | 0.82[EUR][1000 genomes] |
| rs1413056 | 0.82[EUR][1000 genomes] |
| rs1930814 | 0.81[EUR][1000 genomes] |
| rs1930815 | 0.84[EUR][1000 genomes] |
| rs2026521 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2324246 | 0.82[EUR][1000 genomes] |
| rs2324247 | 0.82[EUR][1000 genomes] |
| rs2324248 | 0.82[EUR][1000 genomes] |
| rs2875295 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4332638 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4941920 | 0.82[EUR][1000 genomes] |
| rs7317911 | 0.81[EUR][1000 genomes] |
| rs7338797 | 0.82[EUR][1000 genomes] |
| rs7982031 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7987049 | 0.82[EUR][1000 genomes] |
| rs7987225 | 0.89[EUR][1000 genomes] |
| rs7992698 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7999468 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9315670 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs944867 | 0.82[EUR][1000 genomes] |
| rs9548719 | 0.82[EUR][1000 genomes] |
| rs9548720 | 0.86[EUR][1000 genomes] |
| rs9548721 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9548727 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs9548735 | 0.82[EUR][1000 genomes] |
| rs9576774 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv900007 | chr13:39801283-39849423 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054600 | chr13:39801283-40545027 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | nsv1036674 | chr13:39841482-40008117 | Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2151459 | LHFP | cis | parietal | SCAN |
| rs2151459 | MRPS31 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39843000-39848600 | Weak transcription | Left Ventricle | heart |
| 2 | chr13:39843200-39848200 | Weak transcription | Right Atrium | heart |
