Variant report

Variant	rs4332638
Chromosome Location	chr13:39856380-39856381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1413052	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413053	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413054	0.87[EUR][1000 genomes]
rs1413055	0.86[EUR][1000 genomes]
rs1413056	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1930814	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1930815	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2025411	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2026521	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151459	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2324246	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324247	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324248	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2324250	0.87[EUR][1000 genomes]
rs2324251	0.87[EUR][1000 genomes]
rs2875295	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4941920	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73173441	0.82[EUR][1000 genomes]
rs7317911	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7320591	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7338797	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7982031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7987049	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7988506	0.87[EUR][1000 genomes]
rs7992698	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994390	0.87[EUR][1000 genomes]
rs7999468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9315670	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs944867	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs944868	0.87[EUR][1000 genomes]
rs9548719	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548720	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548727	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576774	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4332638	MRPS31	cis	cerebellum	SCAN
rs4332638	LHFP	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39854200-39856600	Weak transcription	Pancreas	Pancrea
2	chr13:39855200-39857600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39855400-39856800	Enhancers	Adipose Nuclei	Adipose
4	chr13:39855600-39856400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:39855600-39857800	Enhancers	HepG2	liver
6	chr13:39855800-39856600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr13:39855800-39856800	Enhancers	Fetal Lung	lung
8	chr13:39855800-39857000	Enhancers	Small Intestine	intestine
9	chr13:39856000-39856600	Enhancers	Liver	Liver
10	chr13:39856000-39856800	Weak transcription	Stomach Mucosa	stomach
11	chr13:39856200-39856800	Weak transcription	Gastric	stomach
12	chr13:39856200-39857800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links