Variant report

Variant	rs944868
Chromosome Location	chr13:39843411-39843412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1413052	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1413053	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1413054	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1413055	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1413056	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1930814	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1930815	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2026521	0.86[EUR][1000 genomes]
rs2324246	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2324247	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2324248	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2324250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2324251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875295	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4332638	0.87[EUR][1000 genomes]
rs4941920	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7317911	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7338797	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7982031	0.87[EUR][1000 genomes]
rs7987049	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7987225	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7988506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992698	0.87[EUR][1000 genomes]
rs7994390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999468	0.87[EUR][1000 genomes]
rs9315670	0.85[EUR][1000 genomes]
rs944867	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548719	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548720	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9548721	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9548727	0.82[EUR][1000 genomes]
rs9576774	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs944868	LHFP	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39842400-39843600	Enhancers	GM12878-XiMat	blood
2	chr13:39843000-39848600	Weak transcription	Left Ventricle	heart
3	chr13:39843200-39848200	Weak transcription	Right Atrium	heart

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