Variant report

Variant	rs215366
Chromosome Location	chr12:47741051-47741052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr12:47740528-47741156	HepG2	liver:	n/a	chr12:47741118-47741127

Variant related genes	Relation type
ENSG00000199566	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11183910	0.92[ASN][1000 genomes]
rs11183915	0.92[ASN][1000 genomes]
rs11183918	1.00[ASN][1000 genomes]
rs11183921	1.00[ASN][1000 genomes]
rs11183922	1.00[ASN][1000 genomes]
rs11183923	1.00[ASN][1000 genomes]
rs11183924	0.92[ASN][1000 genomes]
rs11183927	0.92[ASN][1000 genomes]
rs215343	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215348	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs215350	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs215351	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs215352	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215353	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215354	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs215358	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs215360	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs215362	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs215363	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215368	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215370	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215371	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs215376	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215377	0.81[EUR][1000 genomes]
rs215382	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215383	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215385	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215387	0.82[EUR][1000 genomes]
rs215390	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215393	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215394	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215396	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61927860	0.92[ASN][1000 genomes]
rs61927894	1.00[ASN][1000 genomes]
rs61929787	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47737400-47748400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:47737600-47741600	Enhancers	Liver	Liver
4	chr12:47740000-47741200	Enhancers	HepG2	liver
5	chr12:47740200-47742400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr12:47740800-47742400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr12:47740800-47742400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:47740800-47743000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:47740800-47743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:47740800-47743400	Weak transcription	Osteobl	bone
11	chr12:47741000-47742000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:47741000-47742200	Weak transcription	A549	lung
13	chr12:47741000-47742400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:47741000-47743000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr12:47741000-47743600	Weak transcription	Stomach Mucosa	stomach

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