Variant report

Variant	rs11183915
Chromosome Location	chr12:47770984-47770985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:47763219..47766043-chr12:47768327..47771310,3	MCF-7	breast:
2	chr12:47667295..47669429-chr12:47769964..47771855,2	MCF-7	breast:
3	chr12:47475106..47477797-chr12:47770687..47773338,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM113B-8	chr12:47770307-47773362	predAs_engstrom06_BG718375_1

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11183910	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183911	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11183912	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11183918	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183921	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183922	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183923	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11183924	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11183927	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12371209	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1642941	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs215343	0.85[CEU][hapmap];0.84[ASN][1000 genomes]
rs215352	0.92[ASN][1000 genomes]
rs215353	0.92[ASN][1000 genomes]
rs215363	0.86[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs215366	0.92[ASN][1000 genomes]
rs215368	0.92[ASN][1000 genomes]
rs215370	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs215376	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215382	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215383	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215385	0.92[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215387	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs215390	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215393	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215394	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs215395	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs215396	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61927860	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61927894	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61927895	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61927896	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929787	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47756200-47771000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:47762800-47771800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:47763200-47772200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:47763200-47772200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:47766200-47771200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:47766600-47772200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:47770400-47773200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:47770600-47771400	Enhancers	K562	blood
9	chr12:47770600-47772400	Enhancers	Rectal Smooth Muscle	rectum
10	chr12:47770600-47773200	Enhancers	Adipose Nuclei	Adipose
11	chr12:47770600-47773400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr12:47770800-47771000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr12:47770800-47771000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:47770800-47771000	Enhancers	Colon Smooth Muscle	Colon
15	chr12:47770800-47771000	Active TSS	Fetal Brain Male	brain
16	chr12:47770800-47771000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr12:47770800-47771200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:47770800-47771200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:47770800-47771200	Active TSS	Brain Anterior Caudate	brain
20	chr12:47770800-47771200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr12:47770800-47771200	Enhancers	A549	lung
22	chr12:47770800-47771200	Enhancers	NHEK	skin
23	chr12:47770800-47771200	Enhancers	Osteobl	bone
24	chr12:47770800-47771400	Enhancers	NHLF	lung
25	chr12:47770800-47771800	Enhancers	Lung	lung
26	chr12:47770800-47771800	Enhancers	NHDF-Ad	bronchial
27	chr12:47770800-47772200	Enhancers	Brain Hippocampus Middle	brain
28	chr12:47770800-47772200	Enhancers	Right Atrium	heart
29	chr12:47770800-47772400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr12:47770800-47772400	Enhancers	Ovary	ovary
31	chr12:47770800-47773400	Enhancers	Liver	Liver
32	chr12:47770800-47773600	Enhancers	HUVEC	blood vessel

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