Variant report

Variant	rs61927896
Chromosome Location	chr12:47775686-47775687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47771657..47773684-chr12:47774609..47776242,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11183910	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11183911	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183912	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11183915	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11183918	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11183921	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11183922	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183923	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11183924	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11183927	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12371209	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1642941	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs215377	0.85[EUR][1000 genomes]
rs215385	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs215387	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs215390	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs215393	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs215394	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs215395	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs215396	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61927860	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61927894	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61927895	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61929787	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47771600-47786800	Weak transcription	Fetal Brain Male	brain
2	chr12:47771800-47776200	Weak transcription	Lung	lung
3	chr12:47772200-47777600	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:47772200-47777600	Weak transcription	HMEC	breast
5	chr12:47772200-47777800	Weak transcription	Right Atrium	heart
6	chr12:47772400-47777600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:47772400-47777600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:47772400-47777600	Weak transcription	HSMMtube	muscle
9	chr12:47772400-47777800	Weak transcription	Ovary	ovary
10	chr12:47772800-47775800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:47772800-47777600	Weak transcription	NH-A	brain
12	chr12:47773000-47777600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:47773000-47777800	Weak transcription	NHEK	skin
14	chr12:47773200-47775800	Weak transcription	Adipose Nuclei	Adipose
15	chr12:47773200-47776000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr12:47773200-47777600	Weak transcription	Primary T cells from cord blood	blood
17	chr12:47773200-47777600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:47773200-47777600	Weak transcription	Hela-S3	cervix
19	chr12:47773400-47777600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:47773400-47777600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:47773400-47777600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr12:47773400-47777600	Weak transcription	Osteobl	bone
23	chr12:47773400-47777800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr12:47773400-47781600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr12:47773400-47784400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr12:47773600-47776800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr12:47773600-47777400	Weak transcription	HUVEC	blood vessel
28	chr12:47775000-47776000	Weak transcription	A549	lung
29	chr12:47775600-47778200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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